Publications

2025

Understanding the role of artificial intelligence in improving human well-being within the built environment

Asra Aghaei, Giulia Pedrielli, Teresa Wu, Zheng O’Neill, Burçin Becerik-Gerber, Simi Hoque, Jin Wen

Building Simulation, 2025/7/26

Interpretable deep learning framework for understanding molecular changes in human brains with Alzheimer’s disease: implications for microglia activation and sex differences

Maitry Ronakbhai Trivedi, Amogh Manoj Joshi, Jay Shah, Benjamin P Readhead, Melissa A Wilson, Yi Su, Eric M Reiman, Teresa Wu, Qi Wang

npj Aging, 2025/7/16

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Unsupervised domain adaptation for HVAC fault diagnosis using contrastive adaptation network

Naghmeh Ghalamsiah, Jin Wen, K Selcuk Candan, Teresa Wu, Zheng O’Neill, Asra Aghaei

Energy and Buildings, 2025/6/15

Preterm birth increases susceptibility to hyperglycemia induced glomerular alterations in male mice

Aleksandra Cwiek, Rachel K Dailey, Ayyappa Kumar Sista Kameshwar, Masako Suzuki, Jaya Isaac, Kimberly deRonde, Mark Conaway, Kevin M Bennett, Edwin J Baldelomar, Teng Li, Teresa Wu, Matthew R Hoch, Nicholas W Chavkin, Patrick D Walker, Karen K Hirschi, Kimberly J Reidy, Jennifer R Charlton

Scientific reports, 2025/5/29

Angle-controllable RNA tiles for programable array assembly and RNA sensing

Qi Yang, Xu Chang, Jung Yeon Lee, Henry Wisniewski, You Zhou, Ashley D Bernstein, Edward M Bonder, Jason T Kaelber, Teresa Wu, Giulia Pedrielli, Fei Zhang

Nature communications, 2025/4/19

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Automated multi-lesion annotation in chest x-rays: annotating over 450,000 images from public datasets using the AI-based smart imagery framing and truthing (SIFT) system

Lin Guo, Fleming YM Lure, Teresa Wu, Fulin Cai, Stefan Jaeger, Bin Zheng, Jordan Fuhrman, Hui Li, Maryellen L Giger, Andrei Gabrielian, Alex Rosenthal, Darrell E Hurt, Ziv Yaniv, Li Xia, Weijun Fang, Jingzhe Liu

Medical Imaging 2025: Image Perception, Observer Performance, and Technology Assessment, 2025/4/10

Using Large-scale Contrastive Language-Image Pre-training to Maximize Brain MRI-Based Headache Classification (P4-12.007)

Fazle Rafsani, Devam Sheth, Yiming Che, Jay Shah, Md Mahfuzur Rahman Siddiquee, Catherine Chong, Simona Nikolva, Gina Dumkrieger, Baoxin Li, Teresa Wu, Todd Schwedt

Neurology, 2025/4/8

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Development of an AI-based smart imagery framing and truthing (SIFT) system to annotate pulmonary abnormalities with corresponding boundaries based on CT images

Lin Guo, Lingbo Deng, Stefan Jaeger, Bin Zheng, Qian Xiao, Teresa Wu, Fulin Cai, Fleming YM Lure, Li Xia, Weijun Fang

Medical Imaging 2025: Computer-Aided Diagnosis, 2025/4/4

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Healthy Bio-Core: A Framework for Selection of Homogeneous Healthy Biomedical Multivariate Time Series Employing Classification Performance

Abhidnya Patharkar, Firas Al-Hindawi, Teresa Wu

IEEE Journal of Biomedical and Health Informatics, 2025/3/3

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Game-Theoretic Analysis of Policy Impacts in Competition Between Reverse Supply Chains Involving Traditional and E-Channels

Asra Aghaei, Fulin Cai, Teresa Wu

Smart Cities, 2025/2/18

Abstract TP281: Prevalence of stroke in individuals with Migraine: A risk analysis accounting for comorbidities using participant information from the All of Us database

Nick Seah, Oana Dumitrascu, Todd Schwedt, Teresa Wu, Catherine Chong

Stroke, 2025/2

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Predicting cognitive decline from neuropsychiatric symptoms and Alzheimer’s disease biomarkers: A machine learning approach to a population-based data

Jay Shah, Janina Krell-Roesch, Erica Forzani, David S Knopman, Cliff R Jack, Ronald C Petersen, Yiming Che, Teresa Wu, Yonas E Geda

Journal of Alzheimer’s Disease, 2025/2

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TP-CL: A novel temporal proximity contrastive learning approach for obstructive sleep apnea detection using single-lead electrocardiograms

Fulin Cai, Md Mahfuzur Rahman Siddiquee, Teresa Wu, Victor M Lubecke, Olga Borić-Lubecke

Biomedical Signal Processing and Control, 2025/2/1

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LiveDrive AI: A Pilot Study of a Machine Learning-Powered Diagnostic System for Real-Time, Non-Invasive Detection of Mild Cognitive Impairment

Firas Al-Hindawi, Peter Serhan, Yonas E Geda, Francis Tsow, Teresa Wu, Erica Forzani

Bioengineering, 2025/1/17

Physical activity and the outcome of cognitive trajectory: a machine learning approach

Bettina Barisch-Fritz, Jay Shah, Jelena Krafft, Yonas E Geda, Teresa Wu, Alexander Woll, Janina Krell-Roesch

European Review of Aging and Physical Activity, 2025/1/10

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AnoFPDM: Anomaly Detection with Forward Process of Diffusion Models for Brain MRI

Yiming Che, Fazle Rafsani, Jay Shah, Md Mahfuzur Rahman Siddiquee, Teresa Wu

Proceedings of the Winter Conference on Applications of Computer Vision, 2025

2024

Healthy core: Harmonizing brain MRI for supporting multicenter migraine classification studies

Hyunsoo Yoon, Todd J Schwedt, Catherine D Chong, Oyekanmi Olatunde, Teresa Wu

PloS one, 2024/12/31

Smart Driving Technology for Non-Invasive Detection of Age-Related Cognitive Decline

Peter Serhan, Shaun Victor, Oscar Osorio Perez, Kevin Abi Karam, Anthony Elghoul, Madison Ransdell, Firas Al-Hindawi, Yonas Geda, Geetika Chahal, Danielle Eagan, Teresa Wu, Francis Tsow, Erica Forzani

Sensors, 2024/12/18

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Enhancing Amyloid PET Quantification: MRI-Guided Super-Resolution Using Latent Diffusion Models

Jay Shah, Yiming Che, Javad Sohankar, Ji Luo, Baoxin Li, Yi Su, Teresa Wu, Alzheimer’s Disease Neuroimaging Initiative

Life, 2024/12/1

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End‐to‐End 3D CycleGAN Model for Amyloid PET Harmonization

XUANZHAO DONG, Yalin Wang, Jay Shah, Valentina Ghisays, Ji Luo, Yinghua Chen, Wendy Lee, Baoxin Li, Kewei Chen, Eric M Reiman, Teresa Wu, Yi Su

Alzheimer’s & Dementia, 2024/12

Predictive modeling of biomedical temporal data in healthcare applications: review and future directions

Abhidnya Patharkar, Fulin Cai, Firas Al-Hindawi, Teresa Wu

Frontiers in Physiology, 2024/10/15

Emulation and detection of physical faults and cyber-attacks on building energy systems through real-time hardware-in-the-loop experiments

Guowen Li, Lingyu Ren, Ojas Pradhan, Zheng O’Neill, Jin Wen, Zhiyao Yang, Yangyang Fu, Mengyuan Chu, Jiajing Huang, Teresa Wu, K Selcuk Candan, Veronica Adetola, Qi Zhuu

BMC Informatics, 2024/9/30

Predicting RNA sequence-structure likelihood via structure-aware deep learning

You Zhou, Giulia Pedrielli, Fei Zhang, Teresa Wu

BMC Informatics, 2024/9/30

Evaluation of data imputation approaches for multi-stream building systems data

Ojas Pradhan, Jin Wen, David Hälleberg, Zhelun Chen, Noresh Varman, Jiajing Huang, Teresa Wu, K Selçuk Candan, Zheng O’Neill

Science and Technology for the Built Environment, 2024/9/13

A feature extraction framework with entropy on graphs for cross-dataset building fault detection

Jiajing Huang, Abhidnya Patharkar, Teresa Wu, Jin Wen, Zheng O’Neill, K Selcuk Candan

IEEE 20th International Conference on Automation Science and Engineering (CASE), 2024

An entropy-based causality framework for cross-level faults diagnosis and isolation in building HVAC systems

Jiajing Huang, Naghmeh Ghalamsiah, Abhidnya Patharkar, Ojas Pradhan, Mengyuan Chu, Teresa Wu, Jin Wen, Zheng O’Neill, Kasim Selcuk Candan

Energy and Buildings, 2024/8/15

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E-BDL: enhanced band-dependent learning framework for augmented radar sensing

Fulin Cai, Teresa Wu, Fleming YM Lure

Sensors, 2024/7/17

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Eigen-entropy based time series signatures to support multivariate time series classification

Abhidnya Patharkar, Jiajing Huang, Teresa Wu, Erica Forzani, Leslie Thomas, Marylaura Lind, Naomi Gades

Scientific reports, 2024/7/12

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Anofpdm: Anomaly segmentation with forward process of diffusion models for brain mri

Yiming Che, Fazle Rafsani, Jay Shah, Md Mahfuzur Rahman Siddiquee, Teresa Wu

arXiv preprint arXiv:2404.15683, 2024/4/24

Prediction of Headache Improvement Using Multimodal Machine Learning in Patients with Acute Post-traumatic Headache (P5-12.002)

Amogh Joshi, Md Mahfuzur Rahman Siddiquee, Jay Shah, Todd Schwedt, Catherine Chong, Baoxin Li, Teresa Wu

Neurology, 2024/4/14

Applying Generative Adversarial Network on Structural Brain MRI for Unsupervised Classification of Headache (P5-12.003)

Md Mahfuzur Rahman Siddiquee, Jay Shah, Todd Schwedt, Catherine Chong, Baoxin Li, Teresa Wu

Neurology, 2024/4/14

Securing Grid-Interactive Efficient Buildings (GEB) Through Cyber Defense and Resilient System (CYDRES)

Zheng O’Neill, Jin Wen, Teresa Wu, K Selcuk Candan, Lingyu Ren, Qi Zhu, Guowen Li, Jiajing Huang, Ojas Pradhan

DOE-TAMU-EE9150-Final, 2024/3/25

Correlation enhanced distribution adaptation for prediction of fall risk

Ziqi Guo, Teresa Wu, Thurmon E Lockhart, Rahul Soangra, Hyunsoo Yoon

Scientific reports, 2024/2/12

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A Data-driven AFDD Approach Using Acoustic Emission In Building HVAC Systems

Jiajing Huang, Zhiyao Yang, Guowen Li, Teresa Wu, Zheng O’Neill, Jin Wen, K Selcuk Candan

International High Performance Buildings Conference, 2024

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Ordinal classification with distance regularization for robust brain age prediction

Jay Shah, Md Mahfuzur Rahman Siddiquee, Yi Su, Teresa Wu, Baoxin Li

Proceedings of the IEEE/CVF Winter Conference on Applications of Computer Vision, 2024

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Domain-knowledge Inspired Pseudo Supervision (DIPS) for unsupervised image-to-image translation models to support cross-domain classification

Firas Al-Hindawi, Md Mahfuzur Rahman Siddiquee, Teresa Wu, Han Hu, Ying Sun

Engineering Applications of Artificial Intelligence, 2024/11

2023

Rahman Siddiquee, M.M., Shah, J., Wu, T., Chong, C., Schwedt, T., Dumkrieger, G., Nikolova, S., and Li, B.
Brainomaly: Unsupervised Neurologic Disease Detection Utilizing Unannotated T1- weighted Brain MR Images
In Proceedings of the IEEE/CVF Winter Conference on Applications of Computer Vision

Rahman Siddiquee, M.M., Shah, J., Wu, T., Chong, C., Schwedt, T. and Li, B.
HealthyGAN: Learning from Unannotated Medical Images to Detect Anomalies Associated with Human Disease.
In International Workshop on Simulation and Synthesis in Medical Imaging

Chen, K., Ghisays, V., Luo, J., Chen, Y., Lee, W., Wu, T., Reiman, E., Su, Y.
Harmonizing florbetapir and PiB PET measurements of cortical Aβ plaque burden using multiple regions-of-
interest and machine learning techniques: An alternative to the Centiloid approach

Alzheimer’s & Dementia: The Journal of the Alzheimer’s Association (accepted).

Li, T., Xu, Y., Wu, T., Charlton, J., Bennett, K., Al-Hindawi, F.
BlobCUT: A Contrastive Learning Method to Support Small Blob Detection in Medical Imaging
Bioengineering

Al-Hindawi, F., Rahman Siddiquee, M.M, Wu, T., Hu, H., Sun, Y.
Domain-knowledge Inspired Pseudo Supervision (DIPS) for Unsupervised Image-to-Image Translation Models to Support Cross Domain Classification
Engineering Applications of Artificial Intelligence

Wang, L., Zheng, Z., Su, Y., Chen, K., Weidman, D., Wu, T., Lo, S., Lure, F., Li, J.
Early Prediction of Progression to Alzheimer’s Disease using Multi-Modality Neuroimages by a Novel Ordinal Learning Model ADPacer
IISE Transactions on Healthcare Systems Engineering

Charlton, J., Li, T., Wu, T., DeRonde, K., Xu, Y., Baldelomar, E.J., Bennett, K.
Use of novel structural features to identify urinary biomarkers during acute kidney injury that predict progression
to chronic kidney disease
BMC Nephrology

Zheng, Z., Su, Y., Chen, K., Weidman, D., Wu, T., Lo, S., Lure, F. & Li, J.
Uncertainty-driven modality selection for data-efficient prediction of Alzheimer’s Disease
IISE Transactions on Healthcare Systems Engineering

Zheng, R., Sun, S., Liu, H., Wu, T.,
Deep Neural Networks-Enabled Vehicle Detection Using High-Resolution Automotive Radar Imaging
IEEE Transactions on Aerospace and Electronic Systems

Al-Hindawi, F., Soori, T., Hu, H., Rahman Siddiquee, Yoon, H., Wu, T., Sun, Y.
A Framework for Generalizing Critical Heat Flux Detection Models Using Unsupervised Image-to-Image Translation
Expert Systems with Applications

Mao, L., Li, J., Schwedt, T., Berisha, V., Nikjou, D., Wu, T., Dumkrieger, G., Ross, K., Chong, C.
Questionnaire and Structural Imaging Data Accurately Predict Headache Improvement in Patients with Acute Post-traumatic Headache Attributed to Mild Traumatic Brain Injuries: a Machine Learning Study
Cephalalgia

Ishrak, M.S., Cai, F., Islam, S.M., Boric-Lubecke, O., Wu, T., Lubecke, V.
Doppler Radar Remote Sensing of Respiratory Function
Frontier in Physiology

Cai, F., Patharkar, A., Wu, T., Lure, F., Chen, H., Chen, V.
STRIDE: Systematic Radar Intelligence Analysis for Dementia Risk Evaluation with Gait Signature Simulation and Deep Learning
IEEE Sensors Journal

Li, G., Ren, L., Fu, Y., Yang, Z., Adetola, V., Wen, J., Zhu, Q., Wu, T., Candan, S., O’Neill, Z.
A Critical Review of Cyber-Physical Security for Building Automation Systems
Annual Reviews in Control

Shah, J., Rahman Siddiquee, M, Krell-Roesch, J., Syrjanen, J.A., Kremers, W.K., Vassilaki, M., Forzani, E., Wu, T, Geda, Y. Neuropsychiatric symptoms and commonly used biomarkers of Alzheimer’s disease: A literature review from a machine Learning perspective
Journal of Alzheimer’s Disease

Chong, C., Nikolova, S., Dumkrieger, G., Wu, T., Berisha, V., Li, J., Ross, K., Schwedt, T.
Thalamic subfield iron accumulation after acute mild traumatic injury as a marker of future post-traumatic headache intensity
The Journal of Head and Face Pain

Yang, J., Wang, S., Wu, T.
Maximum mutual information for feature extraction from graph- structured data: Application to Alzheimer’s disease classification
Applied Intelligence

2022

Pradhan, O., Hälleberg, D., Chen, Z., Wen, J., Wu, T., Candan, KS., O’Neill, Z.
Lagged-kNN Based Data Imputation Approach for Multi-Stream Building
5th Herrick Conferences

Nikolova, S., Schwedt, T., Li, J., Wu, T., Dumkrieger, G., Ross, K., Berisha, V., Chong, C.
T2* reduction in patients with acute post-traumatic headache
Cephalalgia

Nikolova, S., Chong, C., Dumkrieger, G., Li, J., Wu, T., Schwedt, T.
Longitudinal Differences in Iron Deposition in Periaqueductal Gray Matter and Anterior Cingulate Cortex are Associated with Response to Erenumab in Migraine
Cephalalgia

Schwedt, J., Nikolova, S., Dumkrieger, G., Li, J., Wu, T., Chong, C.
Longitudinal Changes in Functional Connectivity and Pain-Induced Brain Activations in Patients with Migraine: A Functional MRI Study Pre- and Post- Treatment with Erenumab
The Journal of Headache and Pain

Chen, Y., Wen, J., Pradhan, O., Lo, J., Wu, T.
Using Discrete Bayesian Networks for Diagnosing and Isolating Cross-level Faults in HVAC Systems
Applied Energy

Rahman Siddiquee, M., Shah, J., Chong, C., Nikolova, S., Dumkrieger, G., Li, B., Wu, T., Schwedt, T.
Headache Classification and Automatic Biomarker Extraction from Structural MRIs using Deep Learning
Brain Communications

Huang, J., Yoon, H., Wu, T., Candan, K.S., Pradhan, O., Wen, J., O’Neill, Z.
Eigen-Entropy: A Metric on Multi-variate Sampling Decision
Information Sciences

Xu, Y., Wu, T., Charlton, J., Bennett, K.
GAN Training Acceleration Using Fréchet Descriptor- Based Coreset
Applied Sciences

Huang, J., Yoon, H., Pradhan, O., Wu, T., Wen, J., O’Neill, Z., Candan, K.S.
A Cosine-based Correlation Information Entropy Approach for Building Automatic Fault Detection Baseline Construction
Science and Technology for the Built Environment

Huang, J., Wen, J., Yoon, H., Pradhan, O., Wu, T., O’Neill, Z., Candan, K.S.
Real vs. Simulated: questions on the capability of simulated datasets on building fault detection for energy efficiency from a data driven perspective
Energy and Buildings